chevreulShiny

Tools for managing SingleCellExperiment objects as projects

Bioconductor version: 3.24 · Package version: 1.5.0

Tools for managing SingleCellExperiment objects as projects. Includes functions for analysis and visualization of single-cell data. Also included is a shiny app for visualization of pre-processed scRNA data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chevreulShiny")

Details

Maintainer	Kevin Stachelek <kevin.stachelek@gmail.com>
Author	Kevin Stachelek [aut, cre] (ORCID: <https://orcid.org/0000-0003-2085-695X>), Bhavana Bhat [aut]
License	MIT + file LICENSE
URL	https://github.com/whtns/chevreulShiny, https://whtns.github.io/chevreulShiny/
Bug Reports	https://github.com/cobriniklab/chevreulShiny/issues
Downloads rank	323
Source branch	devel
biocViews	Coverage, DataImport, DimensionReduction, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcription, Transcriptomics, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source package	chevreulShiny_1.5.0.tar.gz
Windows binary (x86_64)	chevreulShiny_1.5.0.zip
macOS binary (arm64)	chevreulShiny_1.5.0.tgz
macOS binary (x86_64)	chevreulShiny_1.5.0.tgz

Dependencies

Depends: R (>= 4.5.0), SingleCellExperiment, shiny (>= 1.6.0), shinydashboard, chevreulProcess, chevreulPlot

Imports: alabaster.base, clustree, ComplexHeatmap, DataEditR (>= 0.0.9), DBI, dplyr, DT, EnhancedVolcano, fs, future, ggplot2, ggplotify, grDevices, methods, patchwork, plotly, purrr, rappdirs, readr, RSQLite, S4Vectors, scales, shinyFiles, shinyhelper, shinyjs, shinyWidgets, stats, stringr, tibble, tidyr, tidyselect, utils, waiter, wiggleplotr

Suggests: BiocStyle, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0), EnsDb.Mmusculus.v79, EnsDb.Hsapiens.v86