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alabaster.vcf

Save and Load Variant Data to/from File

Bioconductor version: 3.24 · Package version: 1.13.1

Save variant calling SummarizedExperiment to file and load them back as VCF objects. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster.vcf")

Details

MaintainerAaron Lun <infinite.monkeys.with.keyboards@gmail.com>
AuthorAaron Lun [aut, cre]
LicenseMIT + file LICENSE
Downloads rank318
Source branchdevel
biocViewsDataImport, DataRepresentation, Software

Download

Follow the installation instructions to use this package in your R session.

Source packagealabaster.vcf_1.13.1.tar.gz
Windows binary (x86_64)alabaster.vcf_1.13.0.zip
macOS binary (arm64)alabaster.vcf_1.13.0.tgz
macOS binary (x86_64)alabaster.vcf_1.13.0.tgz
Dependencies

Depends: alabaster.base, VariantAnnotation

Imports: methods, S4Vectors, alabaster.se, alabaster.string, Rsamtools

Suggests: knitr, rmarkdown, BiocStyle, testthat

Reverse dependencies

Imports Me (1): alabaster