source("http://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

clusterProfiler

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: 2.13

The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterProfiler")

 

PDF	R Script	An introduction to clusterProfiler
PDF		clusterProfiler_for_unsupported_organisms.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, GO, GeneSetEnrichment, MultipleComparisons, Pathways, Software, Visualization
Version	1.10.1
In Bioconductor since	BioC 2.8 (R-2.13)
License	Artistic-2.0
Depends	R (>= 2.10), ggplot2
Imports	methods, stats4, DBI, plyr, AnnotationDbi, GO.db, KEGG.db, org.Hs.eg.db, DOSE, GOSemSim
Suggests	ReactomePA, pathview, knitr
System Requirements
URL	http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118
Depends On Me
Imports Me
Suggests Me	DOSE, GOSemSim, ReactomePA

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	clusterProfiler_1.10.1.tar.gz
Windows Binary	clusterProfiler_1.10.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	clusterProfiler_1.10.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats