source("http://bioconductor.org/biocLite.R")
biocLite("DOSE")

DOSE

Disease Ontology Semantic and Enrichment analysis

Bioconductor version: 2.13

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring DO semantic similarities, and hypergeometric test for enrichment analysis.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DOSE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DOSE")

 

PDF	R Script	DOSE - an R package for Disease Ontology Semantic and Enrichment
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Bioinformatics, Software
Version	2.0.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	Artistic-2.0
Depends	R (>= 2.10), ggplot2
Imports	methods, plyr, qvalue, stats4, AnnotationDbi, DO.db, org.Hs.eg.db, igraph, scales, reshape2, graphics, GOSemSim, grid
Suggests	clusterProfiler, ReactomePA, knitr
System Requirements
URL
Depends On Me
Imports Me	clusterProfiler, ReactomePA
Suggests Me	GOSemSim

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	DOSE_2.0.0.tar.gz
Windows Binary	DOSE_2.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	DOSE_2.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats