source("http://bioconductor.org/biocLite.R")
biocLite("ReactomePA")

ReactomePA

Reactome Pathway Analysis

Bioconductor version: 2.13

This package provides functions for pathway analysis based on REACTOME pathway database. It will implement enrichment analysis, gene set enrichment analysis and functional modules detection.

Author: Guangchuang Yu <guangchuangyu at gmail.com>

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ReactomePA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReactomePA")

 

PDF	R Script	ReactomePA - an R package for Reactome Pathway Analysis
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Bioinformatics, Pathways, Software, Visualization
Version	1.6.1
In Bioconductor since	BioC 2.10 (R-2.15)
License	GPL-2
Depends
Imports	methods, AnnotationDbi, reactome.db, org.Hs.eg.db, DOSE, stats4, plyr, igraph, qvalue, graphics, graphite
Suggests	clusterProfiler, GOSemSim, knitr
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	clusterProfiler, DOSE

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ReactomePA_1.6.1.tar.gz
Windows Binary	ReactomePA_1.6.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ReactomePA_1.6.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats