source("http://bioconductor.org/biocLite.R")
biocLite("GOSemSim")

GOSemSim

GO-terms Semantic Similarity Measures

Bioconductor version: 2.13

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli strain K12 and Sakai, Fly, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.

Author: Guangchuang Yu

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GOSemSim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOSemSim")

 

PDF	R Script	An introduction to GOSemSim
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, GO, NetworkAnalysis, Pathways, Software
Version	1.20.3
In Bioconductor since	BioC 2.4 (R-2.9)
License	GPL-2
Depends	R (>= 2.10), Rcpp
Imports	methods, AnnotationDbi, GO.db, org.Hs.eg.db, Rcpp
Suggests	DOSE, clusterProfiler, BiocInstaller, knitr
System Requirements
URL	http://bioinformatics.oxfordjournals.org/content/26/7/976.full
Depends On Me	tRanslatome
Imports Me	clusterProfiler, DOSE
Suggests Me	ReactomePA

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GOSemSim_1.20.3.tar.gz
Windows Binary	GOSemSim_1.20.3.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	GOSemSim_1.20.3.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats