affycoretools

Functions useful for those doing repetitive analyses with Affymetrix GeneChips.

Bioconductor version: Release (2.12)

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affycoretools")

To cite this package in a publication, start R and enter:

    citation("affycoretools")

PDF	R Script	affycoretools biomaRt Integration
PDF	R Script	affycoretools Overview
PDF		Reference Manual

biocViews	GeneExpression, Microarray, OneChannel, ReportWriting, Software
Version	1.32.1
In Bioconductor since	BioC 1.8 (R-1.13)
License	Artistic-2.0
Depends	affy, Biobase, GO.db, KEGG.db
Imports	biomaRt, limma, GOstats, annotate, annaffy, genefilter, gcrma, splines, xtable, AnnotationDbi, lattice, gplots, R2HTML, oligoClasses, ReportingTools, hwriter
Suggests	affydata, hgfocuscdf, rgl
System Requirements
URL
Depends On Me	AgiMicroRna
Imports Me
Suggests Me	Agi4x44PreProcess

Common Bioconductor workflows include:

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