graph

graph: A package to handle graph data structures

Bioconductor version: 2.10

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Seth Falcon <sfalcon at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("graph")

To cite this package in a publication, start R and enter:

    citation("graph")

PDF	R Script	Attributes for Graph Objects
PDF	R Script	clusterGraph and distGraph
PDF	R Script	Graph
PDF	R Script	Graph Design
PDF	R Script	graphBAM and MultiGraph classes
PDF		Reference Manual

biocViews	GraphsAndNetworks, Software
Depends	R (>= 2.10), methods
Imports	methods, stats, tools, utils, BiocGenerics(>= 0.1.11)
Suggests	SparseM (>= 0.36), XML, RBGL, RUnit, cluster
System Requirements
License	Artistic-2.0
URL
Depends On Me	apComplex, biocGraph, BioMVCClass, BioNet, CellNOptR, flowWorkspace, gage, gaggle, GOFunction, GOstats, GraphAT, graphite, GSEABase, gwascat, hyperdraw, hypergraph, KEGGgraph, maigesPack, NCIgraph, nem, netresponse, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCytoscape, Rgraphviz, RpsiXML, Rtreemix, SNAData, SRAdb, topGO, yeastExpData
Imports Me	biocGraph, biocViews, CAMERA, Category, categoryCompare, DEGraph, flowCore, flowUtils, flowWorkspace, GeneAnswers, GOFunction, GOstats, GraphAT, graphite, GSEABase, HTSanalyzeR, KEGGgraph, keggorthology, NCIgraph, nem, PCpheno, pkgDepTools, ppiStats, qpgraph, RchyOptimyx, Rgraphviz, rsbml, Rtreemix, Streamer, topGO
Suggests Me	BiocCaseStudies, Category, categoryCompare, DEGraph, EBcoexpress, ecolitk, GSVA, MmPalateMiRNA, qpgraph, RedeR, SPIA
Version	1.34.0
Since	Bioconductor 1.6 (R-2.1) or earlier

Common Bioconductor workflows include:

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!