CellNOptR

R version of CellNOpt, boolean features only

Bioconductor version: 2.10

This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

Author: C.Terfve, T.Cokelaer

Maintainer: T.Cokelaer <cokelaer at ebi.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CellNOptR")

To cite this package in a publication, start R and enter:

    citation("CellNOptR")

Documentation

PDF	R Script	CellNOptR0_1flowchart.pdf
PDF	R Script	Fig2.pdf
PDF	R Script	Fig3.pdf
PDF	R Script	Fig4.pdf
PDF	R Script	Fig6.pdf
PDF	R Script	Main vignette:Playing with networks using CellNOptR
PDF		Reference Manual

Details

biocViews	Bioinformatics, CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse
Depends	RBGL, graph
Imports
Suggests	Rgraphviz
System Requirements	Graphviz version >= 2.2
License	GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version	1.2.0
Since	Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source	CellNOptR_1.2.0.tar.gz
Windows Binary	CellNOptR_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	CellNOptR_1.2.0.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center