GOstats

Tools for manipulating GO and microarrays.

Bioconductor version: 2.10

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author: R. Gentleman and S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GOstats")

To cite this package in a publication, start R and enter:

    citation("GOstats")

Documentation

PDF	R Script	Hypergeometric tests for less common model organisms
PDF	R Script	Hypergeometric Tests Using GOstats
PDF	R Script	Visualizing Data Using GOstats
PDF		Reference Manual

Details

biocViews	Annotation, Bioinformatics, GO, MultipleComparisons, Software
Depends	R (>= 2.10), Biobase(>= 1.15.29), Category(>= 2.3.26), graph
Imports	AnnotationDbi(>= 0.0.89), Biobase(>= 1.15.29), Category(>= 2.3.26), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), graph(>= 1.15.15), methods, stats
Suggests	hgu95av2.db(>= 1.13.0), ALL, GO.db(>= 1.13.0), annotate, multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM
System Requirements
License	Artistic-2.0
URL
Depends On Me	attract
Imports Me	affycoretools, attract, categoryCompare
Suggests Me	BiocCaseStudies, eisa, GSEAlm, HTSanalyzeR, MLP, MmPalateMiRNA, oneChannelGUI, phenoDist, qpgraph, safe
Version	2.22.0
Since	Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source	GOstats_2.22.0.tar.gz
Windows Binary	GOstats_2.22.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GOstats_2.22.0.tgz
Package Downloads Report	Download Stats

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