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TDbasedUFEadv

Advanced package of tensor decomposition based unsupervised feature extraction

Bioconductor version: 3.23 · Package version: 1.12.1

This is an advanced version of TDbasedUFE, which is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. In contrast to TDbasedUFE which can perform simple the feature selection and the multiomics analyses, this package can perform more complicated and advanced features, but they are not so popularly required. Only users who require more specific features can make use of its functionality.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TDbasedUFEadv")

Details

MaintainerY-h. Taguchi <tag@granular.com>
AuthorY-h. Taguchi [aut, cre] (ORCID: <https://orcid.org/0000-0003-0867-8986>)
LicenseGPL-3
URLhttps://github.com/tagtag/TDbasedUFEadv
Bug Reportshttps://github.com/tagtag/TDbasedUFEadv/issues
Downloads rank366
Source branchRELEASE_3_23
biocViewsFeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageTDbasedUFEadv_1.12.1.tar.gz
Windows binary (x86_64)TDbasedUFEadv_1.12.1.zip
macOS binary (arm64)TDbasedUFEadv_1.12.1.tgz
macOS binary (x86_64)TDbasedUFEadv_1.12.1.tgz
Dependencies

Imports: TDbasedUFE, Biobase, GenomicRanges, utils, rTensor, methods, graphics, stats, hash, shiny

Suggests: knitr, rmarkdown, testthat (>= 3.0.0), RTCGA.rnaseq, RTCGA.clinical, BiocStyle, MOFAdata, STRINGdb, enrichR, enrichplot, DOSE, gson, ggplot2