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TDbasedUFE

Tensor Decomposition Based Unsupervised Feature Extraction

Bioconductor version: 3.23 · Package version: 1.12.0

This is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. It can perform unsupervised feature extraction. It uses tensor decomposition. It is applicable to gene expression, DNA methylation, and histone modification etc. It can perform multiomics analysis. It is also potentially applicable to single cell omics data sets.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TDbasedUFE")

Details

MaintainerY-h. Taguchi <tag@granular.com>
AuthorY-h. Taguchi [aut, cre] (ORCID: <https://orcid.org/0000-0003-0867-8986>)
LicenseGPL-3
URLhttps://github.com/tagtag/TDbasedUFE
Bug Reportshttps://github.com/tagtag/TDbasedUFE/issues
Downloads rank331
Source branchRELEASE_3_23
biocViewsFeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageTDbasedUFE_1.12.0.tar.gz
Windows binary (x86_64)TDbasedUFE_1.12.0.zip
macOS binary (arm64)TDbasedUFE_1.12.0.tgz
macOS binary (x86_64)TDbasedUFE_1.12.0.tgz
Dependencies

Imports: GenomicRanges, rTensor, readr, methods, MOFAdata, tximport, tximportData, graphics, stats, utils, shiny

Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)

Reverse dependencies

Imports Me (1): TDbasedUFEadv