TDbasedUFE
Tensor Decomposition Based Unsupervised Feature Extraction
Bioconductor version: 3.23 · Package version: 1.12.0
This is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. It can perform unsupervised feature extraction. It uses tensor decomposition. It is applicable to gene expression, DNA methylation, and histone modification etc. It can perform multiomics analysis. It is also potentially applicable to single cell omics data sets.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TDbasedUFE") Details
| Maintainer | Y-h. Taguchi <tag@granular.com> |
| Author | Y-h. Taguchi [aut, cre] (ORCID: <https://orcid.org/0000-0003-0867-8986>) |
| License | GPL-3 |
| URL | https://github.com/tagtag/TDbasedUFE |
| Bug Reports | https://github.com/tagtag/TDbasedUFE/issues |
| Downloads rank | 331 |
| Source branch | RELEASE_3_23 |
| biocViews | FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | TDbasedUFE_1.12.0.tar.gz |
| Windows binary (x86_64) | TDbasedUFE_1.12.0.zip |
| macOS binary (arm64) | TDbasedUFE_1.12.0.tgz |
| macOS binary (x86_64) | TDbasedUFE_1.12.0.tgz |
Dependencies
Imports: GenomicRanges, rTensor, readr, methods, MOFAdata, tximport, tximportData, graphics, stats, utils, shiny
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
Reverse dependencies
Imports Me (1): TDbasedUFEadv