BSgenome.Hsapiens.UCSC.hg38

Full genomic sequences for Homo sapiens (UCSC genome hg38)

Bioconductor version: 3.24 · Package version: 1.4.5

Full genomic sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31). The sequences are stored in DNAString objects.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg38")

Details

Maintainer	Bioconductor Package Maintainer <maintainer@bioconductor.org>
Author	The Bioconductor Dev Team
License	Artistic-2.0
Downloads rank	4836
Source branch	devel
biocViews	AnnotationData, BSgenome, Genetics, Homo_sapiens

Download

Follow the installation instructions to use this package in your R session.

Source package

BSgenome.Hsapiens.UCSC.hg38_1.4.5.tar.gz

Dependencies

Depends: R (>= 4.2.0), GenomeInfoDb (>= 1.34.9), BSgenome (>= 1.66.2)

Reverse dependencies

Depends On Me (1): BSgenome.Hsapiens.UCSC.hg38.masked

Imports Me (9): branchpointer, cfDNAPro, decompTumor2Sig, epiregulon, katdetectr, musicatk, ORFhunteR, primirTSS, TENET

Suggests Me (65): ActiveDriverWGS, BSgenome, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor, bsseq, BUSpaRse, ChIPpeakAnno, circRNAprofiler, CleanUpRNAseq, CNEr, crisprBowtie, crisprBwa, crisprDesign, CRISPRseek, crisprShiny, crisprViz, DegCre, DMRcaller, DOTSeq, eisaR, enhancerHomologSearch, EpiCompare, epiSeeker, EpiTxDb, FRASER, GencoDymo2, GenomicRanges, GenomicScores, GenVisR, GRaNIE, GUIDEseq, Gviz, gwas2crispr, HiCDCPlus, MethylSeekR, MIRit, Motif2Site, motifbreakR, MotifPeeker, mSigSpectra, multicrispr, MutSeqR, nullranges, periodicDNA, pqsfinder, RAIDS, RBPSpecificity, REMP, revert, SATS, scanMiRApp, SCOPE, SEMPLR, Seqinfo, signeR, sigvar, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh38, splicelogic, TAPseq, transmogR, Ularcirc, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38