SNPlocs.Hsapiens.dbSNP144.GRCh38

SNP locations for Homo sapiens (dbSNP Build 144)

Bioconductor version: 3.24 · Package version: 0.99.20

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP144.GRCh38")

Details

Maintainer	H. Pagès <hpages@fredhutch.org>
Author	Hervé Pagès
License	Artistic-2.0
Downloads rank	584
Source branch	devel
biocViews	AnnotationData, Genetics, Homo_sapiens, SNPlocs

Download

Follow the installation instructions to use this package in your R session.

Source package

SNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.20.tar.gz

Dependencies

Depends: BSgenome (>= 1.43.4)

Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome

Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38

Reverse dependencies

Suggests Me (5): BSgenome, GenomicFeatures, MungeSumstats, raer, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38