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XtraSNPlocs.Hsapiens.dbSNP144.GRCh38

Extra SNP locations for Homo sapiens (dbSNP Build 144)

Bioconductor version: 3.24 · Package version: 0.99.12

Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh38 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("XtraSNPlocs.Hsapiens.dbSNP144.GRCh38")

Details

MaintainerH. Pages <hpages@fhcrc.org>
AuthorHerve Pages
LicenseArtistic-2.0
Downloads rank404
Source branchdevel
biocViewsAnnotationData, Genetics, Homo_sapiens, XtraSNPlocs

Download

Follow the installation instructions to use this package in your R session.

Source packageXtraSNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.12.tar.gz
Dependencies

Depends: R (>= 2.10), BSgenome

Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome

Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38, SNPlocs.Hsapiens.dbSNP144.GRCh38

Reverse dependencies

Suggests Me (1): BSgenome