chevreulPlot

Plots used in the chevreulPlot package

Bioconductor version: 3.24 · Package version: 1.5.0

Tools for plotting SingleCellExperiment objects in the chevreulPlot package. Includes functions for analysis and visualization of single-cell data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chevreulPlot")

Details

Maintainer	Kevin Stachelek <kevin.stachelek@gmail.com>
Author	Kevin Stachelek [aut, cre] (ORCID: <https://orcid.org/0000-0003-2085-695X>), Bhavana Bhat [aut]
License	MIT + file LICENSE
URL	https://github.com/whtns/chevreulPlot, https://whtns.github.io/chevreulPlot/
Bug Reports	https://github.com/cobriniklab/chevreulPlot/issues
Downloads rank	253
Source branch	devel
biocViews	Coverage, DataImport, DimensionReduction, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcription, Transcriptomics, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source package	chevreulPlot_1.5.0.tar.gz
Windows binary (x86_64)	chevreulPlot_1.5.0.zip
macOS binary (arm64)	chevreulPlot_1.5.0.tgz
macOS binary (x86_64)	chevreulPlot_1.5.0.tgz

Dependencies

Depends: R (>= 4.5.0), SingleCellExperiment, chevreulProcess

Imports: base, cluster, clustree, ComplexHeatmap (>= 2.5.4), circlize, dplyr, EnsDb.Hsapiens.v86, forcats, fs, ggplot2, grid, plotly, purrr, S4Vectors, scales, scater, scran, scuttle, stats, stringr, tibble, tidyr, utils, wiggleplotr (>= 1.13.1), tidyselect, patchwork

Suggests: BiocStyle, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0)

Reverse dependencies

Depends On Me (1): chevreulShiny