chevreulProcess
Tools for managing SingleCellExperiment objects as projects
Bioconductor version: 3.24 · Package version: 1.5.0
Tools for analyzing SingleCellExperiment objects as projects. for input into the chevreulShiny app downstream. Includes functions for analysis of single cell RNA sequencing data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("chevreulProcess")Details
| Maintainer | Kevin Stachelek <kevin.stachelek@gmail.com> |
| Author | Kevin Stachelek [aut, cre] (ORCID: <https://orcid.org/0000-0003-2085-695X>), Bhavana Bhat [aut] |
| License | MIT + file LICENSE |
| URL | https://github.com/whtns/chevreulProcess, https://whtns.github.io/chevreulProcess/ |
| Bug Reports | https://github.com/cobriniklab/chevreulProcess/issues |
| Downloads rank | 328 |
| Source branch | devel |
| biocViews | Coverage, DataImport, DimensionReduction, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcription, Transcriptomics, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | chevreulProcess_1.5.0.tar.gz |
| Windows binary (x86_64) | chevreulProcess_1.5.0.zip |
| macOS binary (arm64) | chevreulProcess_1.5.0.tgz |
| macOS binary (x86_64) | chevreulProcess_1.5.0.tgz |
Dependencies
Depends: R (>= 4.5.0), SingleCellExperiment, scater
Imports: batchelor, bluster, circlize, cluster, DBI, dplyr, EnsDb.Hsapiens.v86, ensembldb, fs, GenomicFeatures, glue, megadepth, methods, purrr, RSQLite, S4Vectors, scran, scuttle, stringr, tibble, tidyr, tidyselect, utils
Suggests: BiocStyle, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0)
Reverse dependencies
Depends On Me (2): chevreulPlot, chevreulShiny