alabaster.sce

Load and Save SingleCellExperiment from File

Bioconductor version: 3.24 · Package version: 1.13.1

Save SingleCellExperiment into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster.sce")

Details

Maintainer	Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Author	Aaron Lun [aut, cre]
License	MIT + file LICENSE
Downloads rank	1584
Source branch	devel
biocViews	DataImport, DataRepresentation, Software

Documentation

Saving SingleCellExperiments to artifacts and back again

Download

Follow the installation instructions to use this package in your R session.

Source package	alabaster.sce_1.13.1.tar.gz
Windows binary (x86_64)	alabaster.sce_1.13.1.zip
macOS binary (arm64)	alabaster.sce_1.13.1.tgz
macOS binary (x86_64)	alabaster.sce_1.13.1.tgz

Dependencies

Depends: SingleCellExperiment, alabaster.base

Imports: methods, alabaster.se, jsonlite

Suggests: knitr, testthat, BiocStyle, rmarkdown

Reverse dependencies

Imports Me (4): alabaster, alabaster.sfe, alabaster.spatial, scRNAseq