TFutils

Bioconductor version: 3.24 · Package version: 1.33.0

This package helps users to work with TF metadata from various sources. Significant catalogs of TFs and classifications thereof are made available. Tools for working with motif scans are also provided.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TFutils")

Details

Maintainer	Vincent Carey <stvjc@channing.harvard.edu>
Author	Vincent Carey [aut, cre], Shweta Gopaulakrishnan [aut]
License	Artistic-2.0
Downloads rank	637
Source branch	devel
biocViews	Software, Transcriptomics

Download

Follow the installation instructions to use this package in your R session.

Source package	TFutils_1.33.0.tar.gz
Windows binary (x86_64)	TFutils_1.33.0.zip
macOS binary (arm64)	TFutils_1.33.0.tgz
macOS binary (x86_64)	TFutils_1.33.0.tgz

Dependencies

Depends: R (>= 4.1.0)

Imports: methods, dplyr, magrittr, miniUI, shiny, Rsamtools, GSEABase, rjson, BiocFileCache, DT, httr, readxl, AnnotationDbi, org.Hs.eg.db, utils, GenomicFiles, SummarizedExperiment

Suggests: knitr, data.table, testthat, AnnotationFilter, Biobase, GenomicFeatures, GenomicRanges, Gviz, IRanges, S4Vectors, EnsDb.Hsapiens.v75, BiocParallel, BiocStyle, GO.db, Seqinfo, UpSetR, ggplot2, png, gwascat, MotifDb, motifStack, RColorBrewer, rmarkdown