MotifDb
An Annotated Collection of Protein-DNA Binding Sequence Motifs
Bioconductor version: 3.24 · Package version: 1.55.0
More than 9900 annotated position frequency matrices from 14 public sources, for multiple organisms.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MotifDb")Details
| Maintainer | Paul Shannon <pshannon@systemsbiology.org> |
| Author | Paul Shannon, Matt Richards |
| License | Artistic-2.0 | file LICENSE |
| Downloads rank | 1421 |
| Source branch | devel |
| biocViews | MotifAnnotation, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | MotifDb_1.55.0.tar.gz |
| Windows binary (x86_64) | MotifDb_1.55.0.zip |
| macOS binary (arm64) | MotifDb_1.55.0.tgz |
| macOS binary (x86_64) | MotifDb_1.55.0.tgz |
Dependencies
Depends: R (>= 3.5.0), methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, Biostrings
Imports: rtracklayer, splitstackshape
Suggests: RUnit, seqLogo, BiocStyle, knitr, rmarkdown, formatR, markdown
Reverse dependencies
Depends On Me (2): generegulation, motifbreakR
Suggests Me (14): ATACseqQC, DiffLogo, enhancerHomologSearch, igvR, memes, MMDiff2, motifStack, motifTestR, profileScoreDist, PWMEnrich, rTRM, TFutils, universalmotif, vtpnet