RBioFormats
R interface to Bio-Formats
Bioconductor version: 3.24 · Package version: 1.13.0
An R package which interfaces the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RBioFormats")Details
| Maintainer | Andrzej Oleś <andrzej.oles@gmail.com> |
| Author | Andrzej Oleś [aut, cre] (ORCID: <https://orcid.org/0000-0003-0285-2787>), John Lee [ctb] (ORCID: <https://orcid.org/0000-0001-5884-4247>) |
| License | GPL-3 |
| URL | https://github.com/aoles/RBioFormats |
| Bug Reports | https://github.com/aoles/RBioFormats/issues |
| System Requirements | Java (>= 1.7) |
| Downloads rank | 571 |
| Source branch | devel |
| biocViews | DataImport, Software |
Download
Follow the installation instructions to use this package in your R session.
| Source package | RBioFormats_1.13.0.tar.gz |
| Windows binary (x86_64) | RBioFormats_1.13.0.zip |
| macOS binary (arm64) | RBioFormats_1.13.0.tgz |
| macOS binary (x86_64) | RBioFormats_1.13.0.tgz |
Dependencies
Imports: EBImage, methods, rJava (>= 0.9-6), S4Vectors, stats
Reverse dependencies
Imports Me (4): alabaster.sfe, islify, scider, SpatialOmicsOverlay
Suggests Me (4): ImageArray, MultiAssaySpatialExperiment, SpatialFeatureExperiment, Voyager