GOstats
Tools for manipulating GO and microarrays
Bioconductor version: 3.24 · Package version: 2.79.0
A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GOstats")Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | Robert Gentleman [aut], Seth Falcon [ctb], Robert Castelo [ctb], Sonali Kumari [ctb] (Converted vignettes from Sweave to R Markdown / HTML.), Dennis Ndubi [ctb] (Converted GOstatsHyperG vignette from Sweave to R Markdown / HTML.), Bioconductor Package Maintainer [cre] |
| License | Artistic-2.0 |
| Downloads rank | 2054 |
| Source branch | devel |
| biocViews | Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways, Software |
Download
Follow the installation instructions to use this package in your R session.
| Source package | GOstats_2.79.0.tar.gz |
| macOS binary (arm64) | GOstats_2.79.0.tgz |
| macOS binary (x86_64) | GOstats_2.79.0.tgz |
Dependencies
Depends: R (>= 2.10), Biobase (>= 1.15.29), Category (>= 2.43.2), graph
Imports: methods, stats, stats4, AnnotationDbi (>= 0.0.89), GO.db (>= 1.13.0), RBGL, annotate (>= 1.13.2), AnnotationForge, Rgraphviz
Suggests: hgu95av2.db (>= 1.13.0), ALL, multtest, genefilter, RColorBrewer, xtable, SparseM, GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics, BiocStyle, knitr
Reverse dependencies
Imports Me (10): affycoretools, attract, categoryCompare, GmicR, ideal, miRLAB, netZooR, pcaExplorer, ReportingTools, scTensor
Suggests Me (11): a4, Category, fastLiquidAssociation, fgga, GSEAlm, maGUI, MLP, qpgraph, RnBeads, safe, sand