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fastLiquidAssociation

functions for genome-wide application of Liquid Association

Bioconductor version: 3.24 · Package version: 1.49.0

This package extends the function of the LiquidAssociation package for genome-wide application. It integrates a screening method into the LA analysis to reduce the number of triplets to be examined for a high LA value and provides code for use in subsequent significance analyses.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fastLiquidAssociation")

Details

MaintainerTina Gunderson <gunderson.tina@gmail.com>
AuthorTina Gunderson
LicenseGPL-2
Downloads rank465
Source branchdevel
biocViewsCellBiology, GeneExpression, Genetics, Pathways, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagefastLiquidAssociation_1.49.0.tar.gz
Windows binary (x86_64)fastLiquidAssociation_1.49.0.zip
macOS binary (arm64)fastLiquidAssociation_1.49.0.tgz
macOS binary (x86_64)fastLiquidAssociation_1.49.0.tgz
Dependencies

Depends: methods, LiquidAssociation, parallel, doParallel, stats, Hmisc, utils

Imports: WGCNA, impute, preprocessCore

Suggests: GOstats, yeastCC, org.Sc.sgd.db