affycoretools
Functions useful for those doing repetitive analyses with Affymetrix GeneChips
Bioconductor version: 3.24 · Package version: 1.85.0
Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affycoretools")Details
| Maintainer | James W. MacDonald <jmacdon@u.washington.edu> |
| Author | James W. MacDonald |
| License | Artistic-2.0 |
| Downloads rank | 997 |
| Source branch | devel |
| biocViews | GeneExpression, Microarray, OneChannel, ReportWriting, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | affycoretools_1.85.0.tar.gz |
| Windows binary (x86_64) | affycoretools_1.85.0.zip |
| macOS binary (arm64) | affycoretools_1.85.0.tgz |
| macOS binary (x86_64) | affycoretools_1.85.0.tgz |
Dependencies
Imports: affy, limma, GOstats, gcrma, splines, xtable, AnnotationDbi, ggplot2, gplots, oligoClasses, ReportingTools, hwriter, lattice, S4Vectors, edgeR, RSQLite, BiocGenerics, DBI, Glimma
Suggests: affydata, hgfocuscdf, BiocStyle, knitr, hgu95av2.db, rgl, rmarkdown