Workflow Package: highthroughputassays

Using Bioconductor with High Throughput Assays

Bioconductor version: 3.7

The workflow illustrates use of the flow cytometry packages to load, transform and visualize the flow data and gate certain populations in the dataset. The workflow loads the `flowCore`, `flowStats` and `flowViz` packages and its dependencies. It loads the ITN data with 15 samples, each of which includes, in addition to FSC and SSC, 5 fluorescence channels: CD3, CD4, CD8, CD69 and HLADR.

Author: Bioconductor Package Maintainer [aut, cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("highthroughputassays")

Documentation

To view available workflows for the version of this package installed in your system, start R and enter:

browseVignettes("highthroughputassays")

 

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R Script

Using Bioconductor with High Throughput Assays

Details

biocViews	ProteomicsWorkflow, Workflow
Version	1.2.0
License	Artistic-2.0
Depends	R (>= 3.3.0), flowCore, flowStats, flowViz
Imports
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL	https://www.bioconductor.org/help/workflows/highthroughputassays/
Depends On Me
Imports Me
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Build Report