flowCore

DOI: 10.18129/B9.bioc.flowCore    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see flowCore.

flowCore: Basic structures for flow cytometry data

Bioconductor version: 3.7

Provides S4 data structures and basic functions to deal with flow cytometry data.

Author: B. Ellis, P. Haaland, F. Hahne, N. Le Meur, N. Gopalakrishnan, J. Spidlen, M. Jiang

Maintainer: M.Jiang <wjiang2 at fhcrc.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowCore")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowCore")

 

PDF	R Script	Basic Functions for Flow Cytometry Data
HTML		fcs3.html
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, FlowCytometry, Infrastructure, Software
Version	1.46.2
In Bioconductor since	BioC 2.0 (R-2.5) (11.5 years)
License	Artistic-2.0
Depends	R (>= 2.10.0)
Imports	Biobase, BiocGenerics(>= 0.1.14), graph, graphics, methods, rrcov, stats, utils, stats4, corpcor, Rcpp, matrixStats
LinkingTo	Rcpp, BH (>= 1.65.0.1)
Suggests	Rgraphviz, flowViz, flowStats, testthat, flowWorkspace, flowWorkspaceData, openCyto, knitr, ggcyto, gridExtra
SystemRequirements	GNU make, C++11
Enhances
URL
Depends On Me	flowBeads, flowBin, flowClean, flowFitExampleData, flowFP, flowMatch, flowStats, flowTime, flowTrans, flowViz, flowVS, flowWorkspace, ggcyto, HDCytoData, healthyFlowData, highthroughputassays, immunoClust, ncdfFlow, plateCore, QUALIFIER
Imports Me	CATALYST, CONFESS, cydar, CytoDx, cytofkit, cytofWorkflow, CytoML, ddPCRclust, diffcyt, flowAI, flowBeads, flowCHIC, flowClust, flowDensity, flowFit, flowMeans, flowMerge, flowPloidy, flowQ, flowQB, FlowSOM, flowStats, flowTrans, flowType, flowUtils, flowViz, GateFinder, MetaCyto, ncdfFlow, oneSENSE, openCyto, plateCore, QUALIFIER, Sconify
Suggests Me	COMPASS, flowPloidyData, FlowRepositoryR, RchyOptimyx
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowCore_1.46.2.tar.gz
Windows Binary	flowCore_1.46.2.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	flowCore_1.46.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowCore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowCore
Package Short Url	http://bioconductor.org/packages/flowCore/
Package Downloads Report	Download Stats