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Bioconductor Workflow Packages
Bioconductor version: 3.7
| Package | Maintainer | Title |
|---|---|---|
| annotation | Bioconductor Package Maintainer | Genomic Annotation Resources |
| arrays | Bioconductor Package Maintainer | Using Bioconductor for Microarray Analysis |
| BiocMetaWorkflow | Mike Smith | BioC Workflow about publishing a Bioc Workflow |
| chipseqDB | Aaron Lun | From reads to regions: a Bioconductor workflow to detect differential binding in ChIP-seq data |
| cytofWorkflow | Malgorzata Nowicka | CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets |
| EGSEA123 | Matthew Ritchie | Easy and efficient ensemble gene set testing with EGSEA |
| eQTL | Vincent Carey | Cloud-enabled cis-eQTL searches with Bioconductor GGtools 5.x |
| ExpressionNormalizationWorkflow | Karthikeyan Murugesan | Gene Expression Normalization Workflow |
| generegulation | Bioconductor Package Maintainer | Finding Candidate Binding Sites for Known Transcription Factors via Sequence Matching |
| highthroughputassays | Bioconductor Package Maintainer | Using Bioconductor with High Throughput Assays |
| liftOver | Bioconductor Package Maintainer | Changing genomic coordinate systems with rtracklayer::liftOver |
| methylationArrayAnalysis | Jovana Maksimovic | A cross-package Bioconductor workflow for analysing methylation array data. |
| proteomics | Bioconductor Package Maintainer | Mass spectrometry and proteomics data analysis |
| recountWorkflow | Leonardo Collado-Torres | recount workflow: accessing over 70,000 human RNA-seq samples with Bioconductor |
| RNAseq123 | Matthew Ritchie | RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR |
| rnaseqGene | Michael Love | RNA-seq workflow: gene-level exploratory analysis and differential expression |
| RnaSeqGeneEdgeRQL | Yunshun Chen, Gordon Smyth | Gene-level RNA-seq differential expression and pathway analysis using Rsubread and the edgeR quasi-likelihood pipeline |
| sequencing | Martin Morgan | Introduction to Bioconductor for Sequence Data |
| simpleSingleCell | Aaron Lun | A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor |
| TCGAWorkflow | Tiago Chedraoui Silva | TCGA Workflow Analyze cancer genomics and epigenomics data using Bioconductor packages |
| variants | Bioconductor Package Maintainer | Annotating Genomic Variants |
Packages »
Bioconductor's stable, semi-annual release:
- Analysis software packages.
- Annotation packages.
- Illustrative experiment data packages.
- Workflow packages.
- Latest release announcement.
Bioconductor is also available via Docker and Amazon Machine Images.
Development Version »
Bioconductor packages under development:
- Analysis software packages.
- Illustrative experiment data packages
Developer Resources:
Bioconductor (R) versions:
- 3.7 (3.5)
- 3.6 (3.4)
- 3.5 (3.4)
- 3.4 (3.3)
- 3.3 (3.3)
- 3.2 (3.2)
- 3.1 (3.2)
- 3.0 (3.1)
- 2.14 (3.1)
- 2.13 (3.0)
- 2.12 (3.0)
- 2.11 (2.15)
- 2.10 (2.15)
- 2.9 (2.14)
- 2.8 (2.13)
- 2.7 (2.12)
- 2.6 (2.11)
- 2.5 (2.10)
- 2.4 (2.9)
- 2.3 (2.8)
- 2.2 (2.7)
- 2.1 (2.6)
- 2.0 (2.5)
- 1.9 (2.4)
- 1.8 (2.3)
- 1.7 (2.2)
- 1.6 (2.1)
Release announcements.
