markernames {flowCore} | R Documentation |
marker names corresponds to the 'desc' column of the phenoData of the flowFrame.
markernames(object, ...) ## S4 method for signature 'flowFrame' markernames(object) markernames(object) <- value ## S4 replacement method for signature 'flowFrame' markernames(object) <- value ## S4 method for signature 'flowSet' markernames(object) ## S4 replacement method for signature 'flowSet' markernames(object) <- value
object |
flowFrame or flowSet |
... |
not used |
value |
a named list or character vector. the names corresponds to the name(channel) and actual values are the desc(marker). |
When extract marker names from a flowSet, it throws the warning if the marker names are not all the same across samples.
marker names as a character vector. The marker names for FSC,SSC and Time channels are automatically excluded in the returned value. When object is a flowSet and the marker names are not consistent across flowFrames, it returns a list of unique marker sets.
data(GvHD) fr <- GvHD[[1]] markernames(fr) chnls <- c("FL1-H", "FL3-H") markers <- c("CD15", "CD14") names(markers) <- chnls markernames(fr) <- markers markernames(fr) fs <- GvHD[1:3] markernames(fs)