Bioc2026 Registration Open!

CNTools

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: 3.24 · Package version: 1.69.0

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNTools")

Details

MaintainerJ. Zhang <jzhang@jimmy.harvard.edu>
AuthorJianhua Zhang
LicenseLGPL
Downloads rank568
Source branchdevel
biocViewsCopyNumberVariation, Microarray, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageCNTools_1.69.0.tar.gz
Windows binary (x86_64)CNTools_1.69.0.zip
macOS binary (arm64)CNTools_1.69.0.tgz
macOS binary (x86_64)CNTools_1.69.0.tgz
Dependencies

Depends: R (>= 2.10), methods, tools, stats, genefilter

Reverse dependencies

Depends On Me (1): cghMCR