CNTools
Convert segment data into a region by sample matrix to allow for other high level computational analyses.
Bioconductor version: 3.24 · Package version: 1.69.0
This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CNTools") Details
| Maintainer | J. Zhang <jzhang@jimmy.harvard.edu> |
| Author | Jianhua Zhang |
| License | LGPL |
| Downloads rank | 568 |
| Source branch | devel |
| biocViews | CopyNumberVariation, Microarray, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CNTools_1.69.0.tar.gz |
| Windows binary (x86_64) | CNTools_1.69.0.zip |
| macOS binary (arm64) | CNTools_1.69.0.tgz |
| macOS binary (x86_64) | CNTools_1.69.0.tgz |
Dependencies
Depends: R (>= 2.10), methods, tools, stats, genefilter
Reverse dependencies
Depends On Me (1): cghMCR