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aCGH

Classes and functions for Array Comparative Genomic Hybridization data

Bioconductor version: 3.24 · Package version: 1.91.0

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("aCGH")

Details

MaintainerPeter Dimitrov <dimitrov@stat.Berkeley.EDU>
AuthorJane Fridlyand <jfridlyand@cc.ucsf.edu>, Peter Dimitrov <dimitrov@stat.Berkeley.EDU>
LicenseGPL-2
Downloads rank896
Source branchdevel
biocViewsCopyNumberVariation, DataImport, Genetics, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageaCGH_1.91.0.tar.gz
Windows binary (x86_64)aCGH_1.91.0.zip
macOS binary (arm64)aCGH_1.91.0.tgz
macOS binary (x86_64)aCGH_1.91.0.tgz
Dependencies

Depends: R (>= 2.10), cluster, survival, multtest

Imports: Biobase, grDevices, graphics, methods, stats, splines, utils

Reverse dependencies

Depends On Me (1): CRImage

Imports Me (2): ADaCGH2, rCGH