UniProt.ws

R Interface to UniProt Web Services

Bioconductor version: 3.24 · Package version: 2.53.3

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("UniProt.ws")

Details

Maintainer	Marcel Ramos <marcel.ramos@sph.cuny.edu>
Author	Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre] (ORCID: <https://orcid.org/0000-0002-3242-0582>)
License	Artistic-2.0
URL	https://github.com/Bioconductor/UniProt.ws
Bug Reports	https://github.com/Bioconductor/UniProt.ws/issues
Downloads rank	1299
Source branch	devel
biocViews	Annotation, BioCarta, GO, Infrastructure, KEGG, Software

Documentation

UniProt.ws: A package for retrieving data from the UniProt web service

Download

Follow the installation instructions to use this package in your R session.

Source package	UniProt.ws_2.53.3.tar.gz
Windows binary (x86_64)	UniProt.ws_2.53.3.zip
macOS binary (arm64)	UniProt.ws_2.53.3.tgz
macOS binary (x86_64)	UniProt.ws_2.53.3.tgz

Dependencies

Depends: R (>= 4.5.0)

Imports: AnnotationDbi, BiocFileCache, BiocBaseUtils, BiocGenerics, httr2, jsonlite, methods, progress, rjsoncons, rlang, utils

Suggests: BiocStyle, knitr, rmarkdown, tinytest

Reverse dependencies

Imports Me (4): dagLogo, drugTargetInteractions, ginmappeR, immunogenViewer

Suggests Me (3): autonomics, cleaver, qPLEXanalyzer