immunogenViewer

Visualization and evaluation of protein immunogens

Bioconductor version: 3.24 · Package version: 1.7.0

Plots protein properties and visualizes position of peptide immunogens within protein sequence. Allows evaluation of immunogens based on structural and functional annotations to infer suitability for antibody-based methods aiming to detect native proteins.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("immunogenViewer")

Details

Maintainer	Katharina Waury <kathiwaury@gmail.com>
Author	Katharina Waury [aut, cre] (ORCID: <https://orcid.org/0000-0002-8570-7640>)
License	Apache License (>= 2)
URL	https://github.com/kathiwaury/immunogenViewer
Bug Reports	https://github.com/kathiwaury/immunogenViewer/issues
Downloads rank	249
Source branch	devel
biocViews	FeatureExtraction, Proteomics, Software, Visualization

Documentation

Using immunogenViewer to evaluate and choose antibodies

Download

Follow the installation instructions to use this package in your R session.

Source package	immunogenViewer_1.7.0.tar.gz
Windows binary (x86_64)	immunogenViewer_1.7.0.zip
macOS binary (arm64)	immunogenViewer_1.7.0.tgz
macOS binary (x86_64)	immunogenViewer_1.7.0.tgz

Dependencies

Depends: R (>= 4.0)

Imports: ggplot2, httr, jsonlite, patchwork, UniProt.ws

Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), DT