drugTargetInteractions

drugTargetInteractions: Mining the Druggable Genome

Bioconductor version: 3.24 · Package version: 1.21.14

Utilities for identifying known drug-target interactions for a sets of query drug and/or target protein (gene) identifiers. The interaction information is obained from a series of drug/target databases.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("drugTargetInteractions")

Details

Maintainer	Thomas Girke <thomas.girke@ucr.edu>
Author	Thomas Girke [cre, aut] (ORCID: <https://orcid.org/0000-0003-0710-3777>), Kevin Horan [ctb]
License	Artistic-2.0
URL	https://github.com/girke-lab/drugTargetInteractions
Bug Reports	https://github.com/girke-lab/drugTargetInteractions
Downloads rank	375
Source branch	devel
biocViews	BiomedicalInformatics, Cheminformatics, Metabolomics, Pharmacogenetics, Pharmacogenomics, Proteomics, Software

Download

Follow the installation instructions to use this package in your R session.

Source package	drugTargetInteractions_1.21.14.tar.gz
Windows binary (x86_64)	drugTargetInteractions_1.21.14.zip
macOS binary (arm64)	drugTargetInteractions_1.21.14.tgz
macOS binary (x86_64)	drugTargetInteractions_1.21.14.tgz

Dependencies

Depends: methods, R (>= 4.1)

Imports: utils, stats, RSQLite, UniProt.ws, biomaRt, ensembldb, BiocFileCache, rappdirs, AnnotationFilter, S4Vectors, httr2, readxl, jsonlite

Suggests: RUnit, BiocStyle, knitr, rmarkdown, ggplot2, reshape2, DT, EnsDb.Hsapiens.v86, testthat (>= 3.0.0)