kissDE
Retrieves Condition-Specific Variants in RNA-Seq Data
Bioconductor version: 3.24 · Package version: 1.33.0
Retrieves condition-specific variants in RNA-seq data (SNVs, alternative-splicings, indels). It has been developed as a post-treatment of 'KisSplice' but can also be used with user's own data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("kissDE")Details
| Maintainer | Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr> |
| Author | Clara Benoit-Pilven [aut], Camille Marchet [aut], Janice Kielbassa [aut], Lilia Brinza [aut], Audric Cologne [aut], Aurelie Siberchicot [aut, cre] (ORCID: <https://orcid.org/0000-0002-7638-8318>), Vincent Lacroix [aut], Frank Picard [ctb], Laurent Jacob [ctb], Vincent Miele [ctb] |
| License | GPL (>= 2) |
| URL | https://github.com/lbbe-software/kissDE |
| Bug Reports | https://github.com/lbbe-software/kissDE/issues |
| Downloads rank | 456 |
| Source branch | devel |
| biocViews | AlternativeSplicing, DifferentialSplicing, ExperimentalDesign, GenomicVariation, RNASeq, Software, Transcriptomics |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | kissDE_1.33.0.tar.gz |
| Windows binary (x86_64) | kissDE_1.33.0.zip |
| macOS binary (arm64) | kissDE_1.33.0.tgz |
| macOS binary (x86_64) | kissDE_1.33.0.tgz |