AnnotationFilter

Facilities for Filtering Bioconductor Annotation Resources

Bioconductor version: 3.23 · Package version: 1.36.0

This package provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnnotationFilter")

Details

Maintainer	Bioconductor Package Maintainer <maintainer@bioconductor.org>
Author	Martin Morgan [aut], Johannes Rainer [aut], Joachim Bargsten [ctb], Daniel Van Twisk [ctb], Bioconductor Package Maintainer [cre]
License	Artistic-2.0
URL	https://github.com/Bioconductor/AnnotationFilter
Bug Reports	https://github.com/Bioconductor/AnnotationFilter/issues
Downloads rank	12637
Source branch	RELEASE_3_23
biocViews	Annotation, Infrastructure, Software

Documentation

Facilities for Filtering Bioconductor Annotation Resources

Download

Follow the installation instructions to use this package in your R session.

Source package	AnnotationFilter_1.36.0.tar.gz
Windows binary (x86_64)	AnnotationFilter_1.36.0.zip
macOS binary (arm64)	AnnotationFilter_1.36.0.tgz
macOS binary (x86_64)	AnnotationFilter_1.36.0.tgz

Dependencies

Depends: R (>= 3.4.0)

Imports: utils, methods, GenomicRanges, lazyeval

Suggests: BiocStyle, knitr, testthat, RSQLite, org.Hs.eg.db, rmarkdown

Reverse dependencies

Depends On Me (4): chimeraviz, CompoundDb, ensembldb, Organism.dplyr

Imports Me (13): biovizBase, BUSpaRse, CleanUpRNAseq, drugTargetInteractions, GenomicDistributionsData, ggbio, locuszoomr, QFeatures, RAIDS, RITAN, RNAseqQC, scanMiRApp, TVTB

Suggests Me (4): GenomicDistributions, GenomicFeatures, TFutils, wiggleplotr