RITAN
Rapid Integration of Term Annotation and Network resources
Bioconductor version: 3.23 · Package version: 1.36.0
Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RITAN")Details
| Maintainer | Michael Zimmermann <mtzimmermann@mcw.edu> |
| Author | Michael Zimmermann [aut, cre] |
| License | file LICENSE |
| Downloads rank | 438 |
| Source branch | RELEASE_3_23 |
| biocViews | FunctionalGenomics, GeneSetEnrichment, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, QualityControl, Software |
Documentation
- Choosing Resources
- Enrichment Vignette
- Multi-Tissue Analysis
- Network Biology (Induced Subnetwork) Vignette
- Relationships Among Resources
Download
Follow the installation instructions to use this package in your R session.
| Source package | RITAN_1.36.0.tar.gz |
| Windows binary (x86_64) | RITAN_1.36.0.zip |
| macOS binary (arm64) | RITAN_1.36.0.tgz |
| macOS binary (x86_64) | RITAN_1.36.0.tgz |
Dependencies
Depends: R (>= 4.0)
Imports: graphics, methods, stats, utils, grid, gridExtra, reshape2, gplots, ggplot2, plotrix, RColorBrewer, STRINGdb, MCL, dynamicTreeCut, gsubfn, hash, png, sqldf, igraph, BgeeDB, knitr, RITANdata, GenomicFeatures, ensembldb, AnnotationFilter, EnsDb.Hsapiens.v86