To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rgraphviz")

In most cases, you don't need to download the package archive at all.

Rgraphviz

Provides plotting capabilities for R graph objects

Bioconductor version: 2.14

Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.

Author: Kasper Daniel Hansen [cre, aut], Jeff Gentry [aut], Li Long [aut], Robert Gentleman [aut], Seth Falcon [aut], Florian Hahne [aut], Deepayan Sarkar [aut]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("Rgraphviz")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rgraphviz")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rgraphviz")

PDF	R Script	A New Interface to Plot Graphs Using Rgraphviz
PDF	R Script	How To Plot A Graph Using Rgraphviz
PDF		Reference Manual
Text		NEWS

Details

biocViews	GraphAndNetwork, Software, Visualization
Version	2.8.1
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	EPL
Depends	R (>= 2.6.0), methods, utils, graph, grid
Imports	stats4, graphics, grDevices
Suggests	RUnit, BiocGenerics, XML
System Requirements	optionally Graphviz (>= 2.16)
URL
Depends On Me	biocGraph, BioMVCClass, CellNOptR, flowCL, flowMerge, gaucho, GOFunction, MineICA, nem, netresponse, paircompviz, pathRender, ROntoTools, SplicingGraphs, TDARACNE
Imports Me	apComplex, biocGraph, CompGO, DEGraph, flowWorkspace, GOFunction, hyperdraw, nem, openCyto, paircompviz, pathview, qpgraph, RchyOptimyx, SplicingGraphs
Suggests Me	altcdfenvs, annotate, BiocCaseStudies, Category, CNORfeeder, CNORfuzzy, ddgraph, DEGraph, flowCore, GeneNetworkBuilder, geneplotter, GlobalAncova, globaltest, GOstats, GSEABase, KEGGgraph, MLP, NCIgraph, NCIgraphData, oneChannelGUI, pcaGoPromoter, pkgDepTools, RBGL, RBioinf, rBiopaxParser, RDAVIDWebService, RpsiXML, Rtreemix, safe, SNAData, SPIA, SRAdb, Streamer, topGO, vtpnet

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	Rgraphviz_2.8.1.tar.gz
Windows Binary	Rgraphviz_2.8.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	Rgraphviz_2.8.1.tgz
Mac OS X 10.9 (Mavericks)	Rgraphviz_2.8.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Oligonucleotide Arrays
High-throughput Sequencing
Counting Reads for Differential Expression (parathyroideSE vignette)
Annotation
Annotating Variants
Annotating Ranges
Flow Cytometry and other assays
Candidate Binding Sites for Known Transcription Factors
Cloud-enabled cis-eQTL search and annotation

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center