source("http://bioconductor.org/biocLite.R")
biocLite("seqLogo")

seqLogo

Sequence logos for DNA sequence alignments

Bioconductor version: 2.13

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Author: Oliver Bembom

Maintainer: Oliver Bembom <oliver.bembom at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("seqLogo")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqLogo")

 

PDF	R Script	Sequence logos for DNA sequence alignments
PDF		Reference Manual

Details

biocViews	SequenceMatching, Software
Version	1.28.0
In Bioconductor since	BioC 2.0 (R-2.5)
License	LGPL (>= 2)
Depends	methods, grid
Imports
Suggests
System Requirements
URL
Depends On Me	motifRG, rGADEM, spliceSites
Imports Me	motifRG, PWMEnrich, rGADEM, TFBSTools
Suggests Me	BCRANK, MotifDb

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	seqLogo_1.28.0.tar.gz
Windows Binary	seqLogo_1.28.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	seqLogo_1.28.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats