source("http://bioconductor.org/biocLite.R")
biocLite("spliceSites")

spliceSites

Manages align gap positions from RNA-seq data

Bioconductor version: 2.13

Align gap positions from RNA-seq data

Author: Wolfgang Kaisers

Maintainer: Wolfgang Kaisers <kaisers at med.uni-duesseldorf.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("spliceSites")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spliceSites")

 

PDF	R Script	RNA-seq
PDF		Reference Manual

Details

biocViews	DifferentialExpression, GeneExpression, Proteomics, RNAseq, Software
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-2
Depends	methods, rbamtools, refGenome (>= 1.1.2), doBy, Biobase, Biostrings(>= 2.28.0), seqLogo
Imports	BiocGenerics
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	spliceSites_1.0.0.tar.gz
Windows Binary	spliceSites_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	spliceSites_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats