source("http://bioconductor.org/biocLite.R")
biocLite("motifRG")

motifRG

A package for discriminative motif discovery, designed for high throughput sequencing dataset

Bioconductor version: 2.13

Tools for discriminative motif discovery using regression methods

Author: Zizhen Yao

Maintainer: Zizhen Yao <yzizhen at fhcrc.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("motifRG")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("motifRG")

 

PDF	R Script	motifRG: regression-based discriminative motif discovery
PDF		Reference Manual

Details

biocViews	MotifDiscovery, Software, Transcription
Version	1.6.0
In Bioconductor since	BioC 2.10 (R-2.15)
License	Artistic-2.0
Depends	R (>= 2.15), Biostrings(>= 2.26), IRanges, seqLogo, parallel, methods, grid, graphics, BSgenome, XVector, BSgenome.Hsapiens.UCSC.hg19
Imports	Biostrings, IRanges, seqLogo, parallel, methods, grid, graphics, XVector
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System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	motifRG_1.6.0.tar.gz
Windows Binary	motifRG_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	motifRG_1.6.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats