source("http://bioconductor.org/biocLite.R")
biocLite("bumphunter")

bumphunter

Bump Hunter

Bioconductor version: 2.13

Tools for finding bumps in genomic data

Author: Rafael A. Irizarry, Martin Aryee, Hector Corrada Bravo, Kasper D. Hansen, Harris A. Jaffee

Maintainer: Rafael A. Irizarry <rafa at jhu.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("bumphunter")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bumphunter")

 

PDF	R Script	The bumphunter user's guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, Epigenetics, Infrastructure, MultipleComparisons, Software
Version	1.2.0
In Bioconductor since	BioC 2.12 (R-3.0)
License	Artistic-2.0
Depends	R (>= 2.10), IRanges, GenomicRanges, foreach, iterators, methods, parallel, locfit
Imports	matrixStats, limma, itertools, doRNG
Suggests	RUnit, BiocGenerics, doParallel, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
System Requirements
URL
Depends On Me	minfi
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	bumphunter_1.2.0.tar.gz
Windows Binary	bumphunter_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	bumphunter_1.2.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats