source("http://bioconductor.org/biocLite.R")
biocLite("minfi")

minfi

Analyze Illumina's 450k methylation arrays

Bioconductor version: 2.13

Tools for analyzing and visualizing Illumina's 450k array data

Author: Kasper Daniel Hansen [cre, aut], Martin Ayree [aut], Rafael A. Irizarry [aut], Andrew E. Jaffe [ctb], Jovana Maksimovic [ctb], E. Andres Houseman [ctb]

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("minfi")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("minfi")

 

PDF	R Script	Minfi Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, DataImport, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.8.9
In Bioconductor since	BioC 2.9 (R-2.14)
License	Artistic-2.0
Depends	methods, BiocGenerics(>= 0.3.2), Biobase(>= 2.17.8), lattice, reshape, GenomicRanges, Biostrings, utils, bumphunter(>= 1.1.9)
Imports	IRanges, beanplot, RColorBrewer, nor1mix, siggenes, limma, preprocessCore, illuminaio, matrixStats, mclust, genefilter, nlme
Suggests	IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylation450kanno.ilmn12.hg19, minfiData(>= 0.4.1), quadprog, FlowSorted.Blood.450k(>= 1.0.1), RUnit, digest
System Requirements
URL
Depends On Me	ChAMP, FlowSorted.Blood.450k, IlluminaHumanMethylation27kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylation450kmanifest, minfiData
Imports Me	methylumi
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	minfi_1.8.9.tar.gz
Windows Binary	minfi_1.8.9.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	minfi_1.8.9.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats