source("http://bioconductor.org/biocLite.R")
biocLite("GSEABase")

GSEABase

Gene set enrichment data structures and methods

Bioconductor version: 2.13

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GSEABase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSEABase")

 

PDF	R Script	An introduction to GSEABase
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Infrastructure, Software
Version	1.24.0
In Bioconductor since	BioC 2.1 (R-2.6)
License	Artistic-2.0
Depends	R (>= 2.6.0), BiocGenerics(>= 0.3.2), Biobase(>= 2.17.8), annotate, methods, graph(>= 1.37.2)
Imports	AnnotationDbi, XML
Suggests	hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools
System Requirements
URL
Depends On Me	AGDEX, BicARE, gCMAP, GSVA, GSVAdata, PROMISE
Imports Me	Category, categoryCompare, cellHTS2, gCMAPWeb, GSRI, GSVA, HTSanalyzeR, PCpheno, phenoTest, PROMISE, ReportingTools
Suggests Me	BiocCaseStudies, gage, GlobalAncova, globaltest, GOstats, GSEAlm, PGSEA, phenoTest

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GSEABase_1.24.0.tar.gz
Windows Binary	GSEABase_1.24.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	GSEABase_1.24.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats