ind1KG
Data from 1000 Genomes, NA19240 (female) chr6 excerpt
Bioconductor version: 2.10
Elements of samtools/bioc workflow for dealing with personal sequence focusing on identification and interpretation of rare variants
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("ind1KG")
To cite this package in a publication, start R and enter:
citation("ind1KG")
Documentation
| R Script | ind1KG -- 1000 genomes data demo | |
| R Script | Notes for eSet developers | |
| Reference Manual |
Details
| biocViews | ExperimentData, Genetics, HighThroughputSequencing |
| Depends | R (>= 2.10.1), Rsamtools, TxDb.Hsapiens.UCSC.hg18.knownGene |
| Imports | |
| Suggests | GenomicFeatures, rtracklayer, org.Hs.eg.db, chopsticks, SNPlocs.Hsapiens.dbSNP.20090506, lumiHumanIDMapping, GGBase, GGtools, hmyriB36 |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 0.1.13 |
Package Downloads
| Package Source | ind1KG_0.1.13.tar.gz |
| Windows Binary | ind1KG_0.1.13.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | ind1KG_0.1.13.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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