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GGtools
software and data for analyses in genetics of gene expression
Bioconductor version: 2.10
software and data for analyses in genetics of gene expression
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("GGtools")
To cite this package in a publication, start R and enter:
citation("GGtools")
Documentation
| R Script | GGtools 2012: efficient tools for eQTL discovery | |
| Reference Manual | ||
| Text | README | |
| Text | NEWS |
Details
| biocViews | Software |
| Depends | R (>= 2.14), stats4, GGBase(>= 3.16.1), IRanges, GenomicRanges, Rsamtools |
| Imports | methods, utils, stats, BiocGenerics, snpStats, ff, AnnotationDbi, Biobase, bit, VariantAnnotation |
| Suggests | GGdata, illuminaHumanv1.db |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | ceu1kg, cgdv17, cheung2010, encoDnaseI, ggtut |
| Imports Me | ceuhm3 |
| Suggests Me | hmyriB36, ind1KG |
| Version | 4.4.0 |
| Since | Bioconductor 1.9 (R-2.4) |
Package Downloads
| Package Source | GGtools_4.4.0.tar.gz |
| Windows Binary | GGtools_4.4.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | GGtools_4.4.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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