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chopsticks
The snp.matrix and X.snp.matrix classes
Bioconductor version: 2.10
Implements classes and methods for large-scale SNP association studies
Author: Hin-Tak Leung <htl10 at users.sourceforge.net>
Maintainer: Hin-Tak Leung <htl10 at users.sourceforge.net>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("chopsticks")
To cite this package in a publication, start R and enter:
citation("chopsticks")
Documentation
| R Script | snpMatrix | |
| R Script | snpMatrix-paper-HumanHeridity2007.pdf | |
| R Script | snpStatsBug-vignette.pdf | |
| R Script | snpStatsBug_1.3.6_-vignette.pdf | |
| R Script | snpStatsBug_1.5.4_-vignette.pdf | |
| Reference Manual |
Details
| biocViews | Microarray, SNPsAndGeneticVariability, Software |
| Depends | R(>= 2.10.0), survival, methods |
| Imports | |
| Suggests | hexbin |
| System Requirements | |
| License | GPL-3 |
| URL | http://outmodedbonsai.sourceforge.net/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | ind1KG |
| Version | 1.20.5 |
| Since | Bioconductor 2.8 (R-2.13) |
Package Downloads
| Package Source | chopsticks_1.20.5.tar.gz |
| Windows Binary | chopsticks_1.20.5.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | chopsticks_1.20.5.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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