rTRM
Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks
Bioconductor version: 3.23 · Package version: 1.50.0
rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rTRM")Details
| Maintainer | Diego Diez <diego10ruiz@gmail.com> |
| Author | Diego Diez |
| License | GPL-3 |
| URL | https://github.com/ddiez/rTRM |
| Bug Reports | https://github.com/ddiez/rTRM/issues |
| Downloads rank | 700 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneRegulation, GraphAndNetwork, Network, Software, Transcription |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | rTRM_1.50.0.tar.gz |
| Windows binary (x86_64) | rTRM_1.49.0.zip |
| macOS binary (arm64) | rTRM_1.50.0.tgz |
| macOS binary (x86_64) | rTRM_1.50.0.tgz |
Dependencies
Depends: R (>= 2.10), igraph (>= 1.0)
Imports: methods, AnnotationDbi, DBI, RSQLite
Suggests: RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2, BiocStyle, knitr, rmarkdown
Reverse dependencies
Imports Me (1): rTRMui