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nnNorm

Spatial and intensity based normalization of cDNA microarray data based on robust neural nets

Bioconductor version: 3.23 · Package version: 2.76.0

This package allows to detect and correct for spatial and intensity biases with two-channel microarray data. The normalization method implemented in this package is based on robust neural networks fitting.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nnNorm")

Details

MaintainerAdi Laurentiu Tarca <atarca@med.wayne.edu>
AuthorAdi Laurentiu Tarca <atarca@med.wayne.edu>
LicenseLGPL
URLhttp://bioinformaticsprb.med.wayne.edu/tarca/
Downloads rank522
Source branchRELEASE_3_23
biocViewsMicroarray, Preprocessing, Software, TwoChannel

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagennNorm_2.76.0.tar.gz
Windows binary (x86_64)nnNorm_2.76.0.zip
macOS binary (arm64)nnNorm_2.76.0.tgz
macOS binary (x86_64)nnNorm_2.76.0.tgz
Dependencies

Depends: R (>= 2.2.0), marray

Imports: graphics, grDevices, marray, methods, nnet, stats