marray
Exploratory analysis for two-color spotted microarray data
Bioconductor version: 3.23 · Package version: 1.90.0
Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("marray")Details
| Maintainer | Yee Hwa (Jean) Yang <jean@biostat.ucsf.edu> |
| Author | Yee Hwa (Jean) Yang <jeany@maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit. |
| License | LGPL |
| URL | http://www.maths.usyd.edu.au/u/jeany/ |
| Downloads rank | 2697 |
| Source branch | RELEASE_3_23 |
| biocViews | Microarray, Preprocessing, Software, TwoChannel |
Documentation
- marray Normalization
- marray Overview
- marrayClasses Overview
- marrayClasses Tutorial (short)
- marrayInput Introduction
- marrayPlots Overview
Download
Follow the installation instructions to use this package in your R session.
| Source package | marray_1.90.0.tar.gz |
| Windows binary (x86_64) | marray_1.90.0.zip |
| macOS binary (arm64) | marray_1.90.0.tgz |
| macOS binary (x86_64) | marray_1.90.0.tgz |
Reverse dependencies
Depends On Me (10): beta7, CGHbase, convert, dyebias, dyebiasexamples, nnNorm, OLIN, RBM, stepNorm, TurboNorm
Imports Me (11): arrayQuality, ChAMP, methylPipe, MSstats, MSstatsShiny, nnNorm, OLIN, OLINgui, piano, stepNorm, timecourse
Suggests Me (4): AgiMicroRna, DEGraph, hexbin, Mfuzz