epivizrStandalone

Run Epiviz Interactive Genomic Data Visualization App within R

Bioconductor version: 3.23 · Package version: 1.40.0

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epivizrStandalone")

Details

Maintainer	Hector Corrada Bravo <hcorrada@gmail.com>
Author	Hector Corrada Bravo, Jayaram Kancherla
License	MIT + file LICENSE
Downloads rank	515
Source branch	RELEASE_3_23
biocViews	GUI, Infrastructure, Software, Visualization

Documentation

Introduction to epivizrStandalone

Download

Follow the installation instructions to use this package in your R session.

Source package	epivizrStandalone_1.40.0.tar.gz
Windows binary (x86_64)	epivizrStandalone_1.40.0.zip
macOS binary (arm64)	epivizrStandalone_1.40.0.tgz
macOS binary (x86_64)	epivizrStandalone_1.40.0.tgz

Dependencies

Depends: R (>= 3.2.3), epivizr (>= 2.3.6), methods

Imports: git2r, epivizrServer, Seqinfo, BiocGenerics, GenomicFeatures, S4Vectors

Suggests: testthat, knitr, rmarkdown, OrganismDbi (>= 1.13.9), Mus.musculus, Biobase, BiocStyle

Reverse dependencies

Suggests Me (1): scTreeViz